Yes. 2JR proved on a dyno that the stock box with a drop-in filter had the coolest intake temps after repeated runs. If you're looking for function, this is your best bet right now. Do the full intakes look/sound cool? Yeah, but they aren't as effective
That's a little misleading as to how he tested it as it wasn't an apples-to-apples comparsion, but rather a raw demonstration of principle - and the way Joe did it didn't use a heat shield around the intake - just demonstrating a tube+cone only sort of system. He did get one thing right though: A sealed airbox intake system will perform the best, the most consistently.
After consecutive passes, a short ram intake without any sort of heat shielding is definitely going to make less power - and lose power with each pass. A heat shield can mitigate this problem slightly.
In terms of raw performance, I am betting the Cobb system will ultimately be the most efficient, unless aFe Power, Takeda or Greddy roll out a system for our application. This is because of the combination of a streamlined intake tube with a sealed airbox. Likewise, the full Mountune induction setup with airbox and hoses will also perform similarly well. If there were a way to do the Injen tube with my stock airbox I would've done that.
FSWerks and Injen both could use a better heatshield design but need only minor finessing to be what I would call "perfect", and both need the same type of tweak to prevent the system from drawing in hot air.
It's aesthetic preference at that point whether you preferred Cobb or Mountune's style of intake, or modify the FSWerks or Injen intake to better insulate the filter from hot air.
I think there is a bit of power to be gained in streamlining the air-cleaner-to-turbo intake section, beyond the simple filter. This is why I really like the Cobb setup, but I wouldn't hold my breath either - I will be surprised if we see it get released before SEMA 2014 at this rate.