I don't see why you couldn't just stack your shims, its effectively the same as buying the correct size one. They will be held in place by the bearing race anyway.
The Ford Performance way might not be the "correct" way, but I haven't seen a failure here or elsewhere from following those procedures. This may be different with a clutch type LSD that relies on pressure to make it work vs a mechanical LSD. Not every DIY'er has access to the tools to do it and a lot of transmission shops won't even touch our transmissions due to the lack of availability of individual parts.
The Ford Performance way might not be the "correct" way, but I haven't seen a failure here or elsewhere from following those procedures. This may be different with a clutch type LSD that relies on pressure to make it work vs a mechanical LSD. Not every DIY'er has access to the tools to do it and a lot of transmission shops won't even touch our transmissions due to the lack of availability of individual parts.